VMD MOVIE MAKER HOW TO

Write down the job ID for future reference. In 'VMD movie Generator' diagonal-box, it initially shows Stage: 0 of 0, and Progress 0 of 0. Click on Extensions > Visualization > Movie Maker and make sure your working directory. I am trying to gnerate a movie of my amber-8 trajectory file(a.prmtop and a.mdcrd). This is mainly oriented towards Unix systems (MacOSX / Linux / Unix).

VMD MOVIE MAKER HOW TO

If a 6-digit number appears, the job is accepted. Go to Graphics > Representation > Selected atoms and enter not water. How to turn a series of numbered images into an mpeg or avi movie using free software. sh file is given):īe sure to change the name to whatever your. Hit escape in vi and enter (the name of my. usr/bin/time charmrun +p32 ++nodelist $NODES $NAMD DDM_60ra_nf > DDM_60ra_run8.logīe sure the email is changed to yours, the directory shows cd /scratch/username/foldername, and that you change the names where it says: $NAMD DDM_60ra_nf > DDM_60ra_run8.log.

# Always ask for 16 processors per nodeĬat $PBS_NODEFILE | perl -e 'while() ' > $NODES Note that anything starting with #PBS must be present. Set inputname file_run6 Change to > set inputname file_run7Į) Make sure under 'extendedSystem' that it reads $inputname.xscį) Hit escape in Vi and enter (be sure to change the name of the configuration file with each run):ĩ.

Vmd movie maker